sav file load in FilePSInput.R, FileRepeatedInput.R, FileSurveyInput.RforestcoxServerforestcoxUI, forestcoxServer)forestglmUI, forestglmServer)rocModule: Add accucary/ppv/npv with thresholdwilcox.testPlot panel)feature applies in
jsBasicExtAddin(shiny app)
Add description with callout
Data , Table 1 panelmodified some UI (with style.css)
Data's table column has color (when vairable is category)update DT function (Data)
Column visiblity button addedColumn Reorder feature addedarrow keys)csvfileInput.R Not use file's extension not name. (csv.txt will nor work)ggpairs.R apply theme with less if-elsekaplanModule PPT downloadrocModule
Change jsRepeatedGadjet to jsRepeatedGadget
cutoff fix: rocModule
Add "Show 1-specificity" option
histogramUI, histogramServer)timerocModule, rocModule when 1 model, 1 indpendent variable.timerocModule: Invert plot when auc < 0.5boxUI, boxServer), Lineplot(LineUI, LineServer), Barplot(BarUI, BarServer)coxph ties option to coxModule: ties.coxphkaplanModule runs even if timeby = 1timerocModule: Change AUC/AUC difference 95%CI calculation method to survival::concordanceNew module scatterplotUI & scatterplotServer: scatterplot using ggpubr: apply to Basic statistics
timerocModule, rocModule: Compare ROC curve even if there are different sample size(na omit)
Change timeby unit from 1 to 0.5 (when <365)
Add surv.scale option to kaplan-meier plot
Fix PS matching error with missing values
Fix according to MatchIt 4.0 update.
Erratum: Cumulative hazard -> Cumulative incidence
coxUI, coxModule.Add landmark analysis to kaplan-meier analysis. Pease update jskm to 0.4.0 version.
Add option hide 95%CI of AUC, NRIIDI to timerocModule. It reduces computation time.
Apply AIC based stepwise selection to linear/logistic regression, cox model.
Deprecated fucntion: regressModule & logisticModule, please use regressModule2 & logisticModule2
tb1module1 ,tb1module2: get simulated p value in Fisher exact test when larger than 2 by 2 tables.Incorrect p-value when applying cluster options.
PS matching: allow continuous variables as Independent variables
Change reference of categorical variables
Add line type option to kaplan-meier plot
Change UI: ROC/time-dependent ROC analysis.
Choose cut-off value in kaplan-meier analysis with continuous independent variable.
Add some icons.
Choose multiple conditions when subsetting data.
Add caliper option when propensity score matching.
Make binary variables from contiuous variables.
Non-normal variables can be summarized with [min,max].
Add line color, x-axis label option to kaplan-meier plot
csv file upload.Basic statistics with external file: jsBasicExtAddin
Propensity score analysis with external file: jsPropensityExtAddin
Repeated measure analysis with external file: jsRepeatedExtAddin
Survey data analysis with external file: jsSurveyExtAddin
Regression/Logistic model in jsSurveyAddin.
Id issue in repeated measure analysis.
Error if repeated measure variable is id.
Error if there are missing values.
data.frame vs data.table issue.jsSurveyGadget and FileSurveyInputEncoding issues when reading sav/sas7bdat/dta formats.
Default independent variables when running regression/logistic/cox analysis
limit.unires option to regression/logistic/cox analysis to prevent computation burden.Shiny module forROC analysis : rocUI rocModule.
Add this module to jsBasicGadget and jsRepeatedGadjet.
jsSurveyGadget)Change candidate time variables in survival analysis : allow only > 0
Add option to change legend, p-value position in kaplan-meier plot
Shiny module for time-dependent ROC analysis : timerocUI timerocModule.
Add this module to jsBasicGadget and jsRepeatedGadjet.
Add progress bar to download handlers of scatterplot and kaplan-meier plot.
Kaplan-meier plot in Basic statistics can use continuous variables as group variables. The module suggest best 5 cuts based on the p-values of logrank test.
Add number at risk table option to weighted kalan-meier plot.
Add sub-group analysis based on the range of continuous variable.
Add multiple factor choice option when doing sub-group analysis based on categorical variable.
Fix warn variable error in regressModule, logisticModule.
Fix list of except variables in ggpairsModule.
Update travis-ci.
Add appveyor CI to test window environment.
regressModule, jsBasicGadget.jsSurveyGadgetjsSurveyGadgetjsSurveyGadgetApply list tye independent variables to regressModule, logisticModule, GEEModuleLinear and GEEModuleLogistic
Change sub-group analysis's reactive methods: regressModule, logisticModule, GEEModuleLinear and GEEModuleLogistic
Add marginal cox model option to coxModule, kaplanModule and jsRepeatedGadget
Add Overall kaplan-meier plot to kaplanModule
Set default cluster, strata and weights to None in jsSurveyGadget, FileSurveyInput
Some error comments in coxModule and kaplanModule
Change default candidate dependent variables to categorical variables with 0, 1 in GEEModuleLogistic, jsRepeatedGadget
Module for Survival analysis: coxUI, coxModule, kaplanUI and kaplanModule
Module for ggplot download UI: ggplotdownUI
jsBasicGadget, jsSurveyGadgetjsPropensityGadgetBug fixes : Label information in regressModule, logisticModule
Update: default.unires option to regressModule, logisticModule
FileSurvey, regressModule, logisticModule and jsSurveyGadgetjsSurveyGadgetFileSurveyregressModule, logisticModule and tb1regressModule, logisticModule, jsPropensityGadget, GEEModuleLinear and GEEModuleLogisticFileRepeated, GEEModuleUI, GEEModuleLinear and GEEModuleLogisticjsRepeatedGadgetnfactor.limit in regressModule, logisticModule, jsBasicGadget, csvFileInput and FilePsInputregressModule, logisticModule, jsPropensityGadget can deal missing data issue.
csvFileInput, FilePSInput change variable class integer64 to double.
.dta format.tb1module, tb1module2, tb1simple ,tb1simple2: compatible with updated jstableAdd sub-group analysis to regressModule, logisticModule and jsPropensityGadget.
Apply the updated cox2.display function in jstable package to jsPropensityGadget.
ggpairsModule, ggpairsModule2.IPTW table in tb1simple and tb1simple2 modules.
Kaplan-meier UI in jsPropensityGadget
tb1module and tb1module2 can control the maximum factor levels to include.NA when selecting binary variables.csvFile module can remove empty columns.glmshow.display in jstable package.jsPropensityGadget : Propensity score analysisExcluded non-normal variable selection feature from tb1simple module.
Apply original variable names to label information : csvFileInput & FilePsInput functions.
tb1simpleUI, tb1simple, tb1simple2 for propensity score analysiscsvInput, tb1module and tb1module2FilePsInput, FilePs are modules of data input for propensity score calculation.data.table & fread check.names option to TRUEjsBasicGadget : Basic statisticscsvFile changes variable name including / to _ and etc.sav/sas7bdat formatstbmoduleUI, tbmoduleUI2 : some errortbmoduleUI, tbmoduleUI2 : Apply shapiro.testregressModuleUI, regressModule, regressModule2
logisticModuleUI, logisticModule, logisticModule2
ggpairsModuleUI1, ggpairsModuleUI2, ggpairsModule
regress.display2, logistic.display2 : Regression table for reactive data.csvFile : Add n_ to column names that begin with a number.tb1moduleUI2 can deal reactive datatb1moduleUI, tb1modulecsvFile can deal label informationcsvFileInput, csvFile