Package: jsmodule 1.5.9

jsmodule: 'RStudio' Addins and 'Shiny' Modules for Medical Research

'RStudio' addins and 'Shiny' modules for descriptive statistics, regression and survival analysis.

Authors:Jinseob Kim [aut, cre], Zarathu [cph, fnd], Hyunki Lee [aut], Changwoo Lim [aut], Jinhwan Kim [aut], Yoonkyoung Jeon [aut], Jaewoong Heo [aut], Youngsun Park [aut]

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NEWS

# Install 'jsmodule' in R:
install.packages('jsmodule', repos = c('https://jinseob2kim.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/jinseob2kim/jsmodule/issues

On CRAN:

medicalrstudio-addinsshinyshiny-modulesstatistics

8.00 score 21 stars 61 scripts 1.0k downloads 68 exports 215 dependencies

Last updated 12 days agofrom:bf2035e024. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 11 2024
R-4.5-winOKNov 11 2024
R-4.5-linuxOKNov 11 2024
R-4.4-winOKNov 11 2024
R-4.4-macOKNov 11 2024
R-4.3-winOKNov 11 2024
R-4.3-macOKNov 11 2024

Exports:barServerbarUIboxServerboxUIcoxModulecoxUIcsvFilecsvFileInputFilePsFilePsInputFileRepeatedFileRepeatedInputFileSurveyFileSurveyInputforestcoxServerforestcoxUIforestglmServerforestglmUIGEEModuleLinearGEEModuleLogisticGEEModuleUIggpairsModuleggpairsModule2ggpairsModuleUI1ggpairsModuleUI2ggplotdownUIhistogramServerhistogramUIjsBasicAddinjsBasicExtAddinjsBasicGadgetjsPropensityAddinjsPropensityExtAddinjsPropensityGadgetjsRepeatedAddinjsRepeatedExtAddinjsRepeatedGadgetjsSurveyAddinjsSurveyExtAddinjsSurveyGadgetkaplanModulekaplanUIlineServerlineUIlogistic.display2logisticModule2mklistmksetdiffoptionUIreclassificationJSregress.display2regressModule2regressModuleUIROC_tablerocModulerocModule2rocUIscatterServerscatterUItb1moduletb1module2tb1moduleUItb1simpletb1simple2tb1simpleUItimerocModuletimerocModule2timerocUI

Dependencies:abindaskpassbackportsbase64encbayestestRbdsmatrixbitbit64bootbroombslibcachemcarcarDatacellrangercheckmatechkclassclicliprclustercmprskcodetoolscolorspacecommonmarkcorrelationcorrplotcowplotcoxmecpp11crayoncrosstalkdata.tabledatawizardDBIDerivdiagramdigestdoBydoParalleldplyrDTe1071effectsizeepiDisplayevaluateexactRankTestsfansifarverfastmapflextablefontawesomefontBitstreamVerafontLiberationfontquiverforcatsforeachforeignforestploterFormulafsfuturefuture.applygdatagdtoolsgeepackgenericsGGallyggplot2ggpubrggrepelggsciggsignifggstatsglobalsgluegmodelsgridExtragtablegtoolshavenhighrHmischmshtmlTablehtmltoolshtmlwidgetshttpuvinsightisobanditeratorsjquerylibjskmjsonlitejstableKernSmoothknitrlabelinglabelledlaterlatticelavalazyevallifecyclelistenvlme4magrittrMASSMatchItMatrixMatrixModelsmaxstatmemoisemetsmgcvmicrobenchmarkmimeminqamitoolsmodelbasedmodelrmultcompmunsellmvtnormnlmenloptrnnetnumDerivofficeropensslparallellyparameterspatchworkpbkrtestpecperformancepillarpkgconfigplotrixplyrpolsplinepolynomprettyunitspROCprodlimprogressprogressrpromisesproxyPublishpurrrquantregR6raggrangerrappdirsRColorBrewerRcppRcppArmadilloRcppEigenRcppProgressreadrreadxlrematchriskRegressionrlangrmarkdownrmsrpartrstatixrstudioapirvgsandwichsassscalesseeshapeshinyshinycustomloadershinyjsshinyWidgetssourcetoolsSparseMSQUAREMstringistringrsurvC1surveysurvIDINRIsurvivalsyssystemfontstableonetextshapingTH.datatibbletidyrtidyselecttimeregtimeROCtinytextzdbutf8uuidvctrsviridisviridisLitevroomwithrxfunxml2xtableyamlzipzoo

Introduce RStudio Addins in jsmodule

Jinseob Kim

Rendered fromjsmodule.Rmdusingknitr::rmarkdownon Nov 11 2024.

Last update: 2022-08-08
Started: 2019-02-07

Readme and manuals

Help Manual

Help pageTopics
barServer: shiny module server for barplot.barServer
barUI: shiny module UI for barplotbarUI
boxServer: shiny module server for boxplot.boxServer
boxUI: shiny module UI for boxplotboxUI
coxModule: shiny modulde server for Cox's model.coxModule
coxUI: shiny modulde UI for Cox's model.coxUI
csvFile: Shiny module Server for file upload.csvFile
csvFileInput: Shiny module UI for file upload.csvFileInput
FilePs: Shiny module Server for file upload for propensity score matching.FilePs
FilePsInput: Shiny module UI for file upload for propensity score matching.FilePsInput
FileRepeated: File upload server module for repeated measure analysis.FileRepeated
FileRepeatedInput: File upload UI for repeated measure analysis.FileRepeatedInput
FileSurvey: File upload server module for survey data analysis.FileSurvey
FileSurveyInput: File upload UI for survey data analysis.FileSurveyInput
forestcoxServer:shiny module server for forestcoxforestcoxServer
forestcoxUI:shiny module UI for forestcoxforestcoxUI
forestglmServer:shiny module server for forestglmforestglmServer
forestglmUI:Shiny module UI for forestglmforestglmUI
GEEModuleLinear: shiny modulde server for gaussian generalized estimating equation(GEE) using reactive data.GEEModuleLinear
GEEModuleLogistic: shiny modulde server for binomial gaussian generalized estimating equation(GEE) using reactive data.GEEModuleLogistic
GEEModuleUI: shiny modulde UI for generalized estimating equation(GEE).GEEModuleUI
ggpairsModule: shiny module server for basic/scatter plot.ggpairsModule
ggpairsModule2: shiny module server for basic/scatter plot for reactive data.ggpairsModule2
ggpairsModuleUI1: Variable selection module UI for ggpairsggpairsModuleUI1
ggpairsModuleUI2: Option & download module UI for ggpairsggpairsModuleUI2
ggplotdownUI: Option & download module UI for ggplotggplotdownUI
histogramServer: shiny module server for histogram.histogramServer
histogramUI: shiny module UI for histogramhistogramUI
jsBasicAddin: Rstudio addin of jsBasicGadgetjsBasicAddin
jsBasicExtAddin: RStudio Addin for basic data analysis with external data.jsBasicExtAddin
jsBasicGadget: Shiny Gadget of Basic Statistics in Medical Research.jsBasicGadget
jsPropensityAddin: Rstudio addin of jsPropensityGadgetjsPropensityAddin
jsPropensityExtAddin: RStudio Addin for propensity score analysis with external data.jsPropensityExtAddin
jsPropensityGadget: Shiny Gadget for propensity score analysis.jsPropensityGadget
jsRepeatedAddin: Rstudio addin of jsRepeatedGadgetjsRepeatedAddin
jsRepeatedExtAddin: RStudio Addin for repeated measure analysis with external data.jsRepeatedExtAddin
jsRepeatedGadget: Shiny Gadget of Repeated measure analysis.jsRepeatedGadget
jsSurveyAddin: Rstudio addin of jsSurveyGadgetjsSurveyAddin
jsSurveyExtAddin: RStudio Addin for survey data analysis with external data.jsSurveyExtAddin
jsSurveyGadget: Shiny Gadget of survey data analysis.jsSurveyGadget
kaplanModule: shiny module server for kaplan-meier plot.kaplanModule
kaplanUI: shiny module UI for kaplan-meier plotkaplanUI
lineServer: shiny module server for lineplot.lineServer
lineUI: shiny module UI for lineplotlineUI
logistic.display2: Modified epiDisplay's logistic.display function.logistic.display2
logisticModule2: Shiny modulde server for logistic regression for reactive data.logisticModule2
mk.lev2: level generating functionmk.lev2
mklist: function to make variable list lncluding specific variables.mklist
mksetdiff: function to make variable list excluding specific variables.mksetdiff
optionUI: Option UI with iconoptionUI
reclassificationJS: Function for reclassification table and statisticsreclassificationJS
regress.display2: modified epiDisplay's regress.display functionregress.display2
regressModule2: Shiny modulde server for linear regression for reactive data.regressModule2
regressModuleUI: shiny modulde UI for linear regression.regressModuleUI
ROC_table: extract AUC, NRI and IDI information from list of roc object in pROC packages.ROC_table
rocModule: shiny module server for roc analysisrocModule
rocModule2: shiny module server for roc analysis- input number of model as integerrocModule2
rocUI: shiny module UI for roc analysisrocUI
scatterServer: shiny module server for scatterplot.scatterServer
scatterUI: shiny module UI for scatterplotscatterUI
survIDINRI_helper: Helper function for IDI.INF.OUT in survIDINRI packagessurvIDINRI_helper
tb1module: table 1 shiny module server.tb1module
tb1module2: table 1 shiny module server for reactive data.tb1module2
tb1moduleUI: table 1 module UI.tb1moduleUI
tb1simple: tb1 module server for propensity score analysistb1simple
tb1simple2: tb1 module for propensity score analysis for reactive datatb1simple2
tb1simpleUI : tb1 module UI for propensity score analysistb1simpleUI
timeROC_table: extract AUC information from list of timeROChelper object.timeROC_table
timeROChelper: Helper function for timerocModuletimeROChelper
timerocModule: shiny module server for time-dependent roc analysistimerocModule timerocModule2
timerocUI: shiny module UI for time-dependent roc analysistimerocUI